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Fragment-linking peptide design yields a high-affinity ligand for microtubule-based transport

Cell Chem Biol. 2021-04; 
Jessica A Cross, Magda S Chegkazi, Roberto A Steiner, Derek N Woolfson, Mark P Dodding
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Codon Optimization … A codon-optimized DNA sequence encoding the TPR domain of mouse KLC1 (residues 205 – 496, Uniprot Q5UE59, KLC1 TPR ) fused N-terminally to the KinTag peptide via via a (Thr-Gly-Ser) 10 -Gly flexible connector was purchased from Genscript and subcloned between … Get A Quote

摘要

Synthetic peptides are attractive candidates to manipulate protein-protein interactions inside the cell as they mimic natural interactions to compete for binding. However, protein-peptide interactions are often dynamic and weak. A challenge is to design peptides that make improved interactions with the target. Here, we devise a fragment-linking strategy-"mash-up" design-to deliver a high-affinity ligand, KinTag, for the kinesin-1 motor. Using structural insights from natural micromolar-affinity cargo-adaptor ligands, we have identified and combined key binding features in a single, high-affinity ligand. An X-ray crystal structure demonstrates interactions as designed and reveals only a modest increase in interf... More

關鍵詞

SLiM, TPR domain, intracellular transport, kinesin-1, mash-up design, microtubule transport, peptide design, short linear motif
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