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A structural feature of Dda helicase which enhances displacement of streptavidin and trp repressor from DNA

Protein Sci. 2021-11; 
Alicia K Byrd, Emory G Malone, Lindsey Hazeslip, Maroof Khan Zafar, David K Harrison, Matthew D Thompson, Jun Gao, Senthil K Perumal, John C Marecki, Kevin D Raney
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Codon Optimization … Codon optimized Bacillus amyloliquefaciens H BamHI-E111A was ordered from Genscript and cloned into pSUMO at the BsaI restriction site using Gibson Assembly to produce a 6×His-SUMO tagged BamHI-E111A. LOBSTR cells44 containing the plasmid were grown to an … Get A Quote

摘要

Helicases are molecular motors with many activities. They use the energy from ATP hydrolysis to unwind double-stranded nucleic acids while translocating on the single-stranded DNA. In addition to unwinding, many helicases are able to remove proteins from nucleic acids. Bacteriophage T4 Dda is able to displace a variety of DNA binding proteins and streptavidin bound to biotinylated oligonucleotides. We have identified a subdomain of Dda that when deleted, results in a protein variant that has nearly wild type activity for unwinding double-stranded DNA but exhibits greatly reduced streptavidin displacement activity. Interestingly, this domain has little effect on displacement of either gp32 or BamHI bound to DNA ... More

關鍵詞

DNA unwinding, helicase, pre-steady-state kinetics, protein displacement, structure
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