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Protein structure prediction assisted with sparse NMR data in CASP13.

Proteins. 2019; 
Sala D,, Huang YJ,, Cole CA, Snyder DA, Liu G,, Ishida Y,, Swapna GVT, Brock KP, Sander C,, Fidelis K, Kryshtafovych A, Inouye M, Tejero R, Valafar H, Rosato A,, Montelione GT,,.
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Codon Optimization The synthetic codon optimized gene (Genscript, Inc), designed to exclude ACA nucleotide sequences [27, 28 ], was cloned into This article is protected by copyright. Get A Quote

摘要

CASP13 has investigated the impact of sparse NMR data on the accuracy of protein structure prediction. NOESY and 15 N-1 H residual dipolar coupling data, typical of that obtained for 15 N,13 C-enriched, perdeuterated proteins up to about 40?kDa, were simulated for 11 CASP13 targets ranging in size from 80 to 326 residues. For several targets, two prediction groups generated models that are more accurate than those produced using baseline methods. Real NMR data collected for a de novo designed protein were also provided to predictors, including one data set in which only backbone resonance assignments were available. Some NMR-assisted prediction groups also did very well with these data. CASP13 also assessed w... More

關鍵詞

CASP; contact prediction; protein modeling; residual dipolar coupling; simulated NMR spectra; sparse NMR data; structure prediction
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