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Rare, functional, somatic variants in gene families linked to cancer genes: GPCR signaling as a paradigm.

Oncogene. 2019-07; 
RaimondiFrancesco,InoueAsuka,KadjiFrancois M N,ShuaiNi,GonzalezJuan-Carlos,SinghGurdeep,de la VegaAlicia Alonso,SotilloRocio,FischerBernd,AokiJunken,Silvio GutkindJ,RussellRobe
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Codon Optimization Transfection solution was prepared by combining 190 μl of Opti-MEM? I Reduced Serum Medium (Thermo Fisher Scientific), plasmids encoding pGlo-22F (2 μg, codon-optimized for human cell expression, Genscript, pCAGGS vector) and a GPCR of interest (400 ng, pCAGGS vector or pcDNA3.1 vector), and 10 μl of 1 mg ml?1 PEI solution (Polyethylenimine “Max”, (Mw 40,000), Polysciences). Get A Quote

摘要

Oncodriver genes are usually identified when mutations recur in multiple tumours. Different drivers often converge in the activation or repression of key cancer-relevant pathways. However, as many pathways contain multiple members of the same gene family, individual mutations might be overlooked, as each family member would necessarily have a lower mutation frequency and thus not identified as significant in any one-gene-at-a-time analysis. Here, we looked for mutated, functional sequence positions in gene families that were mutually exclusive (in patients) with another gene in the same pathway, which identified both known and new candidate oncodrivers. For instance, many inactivating mutations in... More

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